pdb: Class Members

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Here is a list of all documented class members with links to the class documentation for each member:

- a -

aend_ : dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator
ait_ : dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator
argument_type : dsrpdb::Atom_index, dsrpdb::Atom_coordinates
atms_ : dsrpdb::Residue_data::Residue_init_data
atom() : dsrpdb::Residue, dsrpdb::Protein
Atom() : dsrpdb::Atom
Atom_label : dsrpdb::Residue
atom_label() : dsrpdb::Residue
atom_label_string() : dsrpdb::Residue
atoms : dsrpdb::Residue_data::Amino_acid_data
Atoms : dsrpdb::Residue
atoms_begin() : dsrpdb::Residue, dsrpdb::Protein
atoms_end() : dsrpdb::Residue, dsrpdb::Protein
Atoms_iterator : dsrpdb::Protein::Atoms_iterator, dsrpdb::Residue

- b -

begin() : dsrpdb::small_map< Key, Data >
bnds_ : dsrpdb::Residue_data::Residue_init_data
Bond : dsrpdb::Residue, dsrpdb::Protein
bonds : dsrpdb::Residue_data::Amino_acid_data
bonds_begin() : dsrpdb::Residue, dsrpdb::Protein
bonds_end() : dsrpdb::Residue, dsrpdb::Protein
Bonds_iterator : dsrpdb::Protein::Bonds_iterator, dsrpdb::Residue

- c -

c_ : dsrpdb::small_map< Key, Data >
can_have_atom() : dsrpdb::Residue
cartesian_coords() : dsrpdb::Atom
chain() : dsrpdb::Protein, dsrpdb::Model
chain_ : dsrpdb::Protein
chains_ : dsrpdb::Model
charge() : dsrpdb::Atom
charge_ : dsrpdb::Atom
Const_atoms_iterator : dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Residue
const_iterator : dsrpdb::small_map< Key, Data >
Const_models_iterator : dsrpdb::PDB
Const_residues_iterator : dsrpdb::Protein
container : dsrpdb::small_map< Key, Data >
coordinates_ : dsrpdb::Atom
cur_ : dsrpdb::Filter_iterator< It, Filter >, dsrpdb::Projection_iterator< It, Projector >
cur_bond() : dsrpdb::Protein::Bonds_iterator

- d -

data_type : dsrpdb::small_map< Key, Data >
difference_type : dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator, dsrpdb::Filter_iterator< It, Filter >, dsrpdb::Projection_iterator< It, Projector >
dump() : dsrpdb::Residue, dsrpdb::Protein

- e -

element() : dsrpdb::Residue, dsrpdb::Atom
element_ : dsrpdb::Atom
end() : dsrpdb::small_map< Key, Data >
end_ : dsrpdb::Filter_iterator< It, Filter >
error() : dsrpdb::Transform
extr_ : dsrpdb::Residue_data::Residue_init_data
extra_ : dsrpdb::Model
extremes : dsrpdb::Residue_data::Amino_acid_data

- f -

f_ : dsrpdb::Filter_iterator< It, Filter >
Filter_iterator() : dsrpdb::Filter_iterator< It, Filter >
find() : dsrpdb::small_map< Key, Data >
fix() : dsrpdb::Filter_iterator< It, Filter >

- h -

has_atom() : dsrpdb::Residue
has_bonds() : dsrpdb::Residue, dsrpdb::Protein
has_residue() : dsrpdb::Protein
header_ : dsrpdb::Protein, dsrpdb::PDB
header_begin() : dsrpdb::PDB
header_end() : dsrpdb::PDB
Header_iterator : dsrpdb::PDB

- i -

i_ : dsrpdb::labeled_index< Type >, dsrpdb::label< Type >
Index : dsrpdb::Residue, dsrpdb::Atom
index() : dsrpdb::Residue, dsrpdb::Model, dsrpdb::Atom
index_ : dsrpdb::Model, dsrpdb::Atom
insert() : dsrpdb::small_map< Key, Data >
iterator : dsrpdb::small_map< Key, Data >
iterator_category : dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator, dsrpdb::Filter_iterator< It, Filter >, dsrpdb::Projection_iterator< It, Projector >

- k -

key_type : dsrpdb::small_map< Key, Data >

- l -

l : dsrpdb::Residue_data::Atom_fallback_data, dsrpdb::Residue_data::Atom_data
label() : dsrpdb::label< Type >
labeled_index() : dsrpdb::labeled_index< Type >
last_atom_index() : dsrpdb::Residue
lr : dsrpdb::Residue_data::Atom_fallback_data

- m -

min_atom_index() : dsrpdb::Residue
Model : dsrpdb::Model, dsrpdb::Protein
model() : dsrpdb::PDB
models_ : dsrpdb::PDB
models_begin() : dsrpdb::PDB
models_end() : dsrpdb::PDB
Models_iterator : dsrpdb::PDB

- n -

nc_ : dsrpdb::Protein::Bonds_iterator
new_chain() : dsrpdb::Model
new_model() : dsrpdb::PDB
number_of_atoms() : dsrpdb::Residue, dsrpdb::Protein
number_of_bonds() : dsrpdb::Residue, dsrpdb::Protein
number_of_chains() : dsrpdb::Model
number_of_models() : dsrpdb::PDB
number_of_residues() : dsrpdb::Protein

- o -

occupancy() : dsrpdb::Atom
occupancy_ : dsrpdb::Atom
operator *() : dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator, dsrpdb::Point, dsrpdb::Filter_iterator< It, Filter >, dsrpdb::Projection_iterator< It, Projector >
operator bool() : dsrpdb::PDB_index< Type >
operator unsigned int() : dsrpdb::PDB_index< Type >
operator!=() : dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator, dsrpdb::PDB_index< Type >, dsrpdb::Filter_iterator< It, Filter >, dsrpdb::Projection_iterator< It, Projector >, dsrpdb::Atom
operator()() : dsrpdb::Transform, dsrpdb::Squared_distance, dsrpdb::Is_CA, dsrpdb::Is_backbone, dsrpdb::Yes, dsrpdb::Atom_index, dsrpdb::Atom_coordinates
operator+() : dsrpdb::Point, dsrpdb::labeled_index< Type >
operator++() : dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator, dsrpdb::labeled_index< Type >, dsrpdb::Filter_iterator< It, Filter >, dsrpdb::Projection_iterator< It, Projector >
operator-() : dsrpdb::Point
operator->() : dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator, dsrpdb::Filter_iterator< It, Filter >, dsrpdb::Projection_iterator< It, Projector >
operator/() : dsrpdb::Point
operator<() : dsrpdb::PDB_index< Type >, dsrpdb::Atom
operator<=() : dsrpdb::PDB_index< Type >
operator==() : dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator, dsrpdb::PDB_index< Type >, dsrpdb::label< Type >, dsrpdb::Filter_iterator< It, Filter >, dsrpdb::Projection_iterator< It, Projector >, dsrpdb::Atom
operator>() : dsrpdb::PDB_index< Type >
operator>=() : dsrpdb::PDB_index< Type >
operator[]() : dsrpdb::small_map< Key, Data >, dsrpdb::Point

- p -

p_ : dsrpdb::Projection_iterator< It, Projector >
PDB : dsrpdb::PDB, dsrpdb::Model
PDB_index() : dsrpdb::PDB_index< Type >
Point() : dsrpdb::Point
pointer : dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator, dsrpdb::Filter_iterator< It, Filter >, dsrpdb::Projection_iterator< It, Projector >
Projection_iterator() : dsrpdb::Projection_iterator< It, Projector >
Protein : dsrpdb::Protein, dsrpdb::Residue, dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator
Protein::Const_atoms_iterator : dsrpdb::Protein::Atoms_iterator

- r -

reference : dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator, dsrpdb::Filter_iterator< It, Filter >, dsrpdb::Projection_iterator< It, Projector >
rend_ : dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator
Residue : dsrpdb::Residue, dsrpdb::Atom
residue() : dsrpdb::Protein
residue_containing_atom() : dsrpdb::Protein
residues_ : dsrpdb::Protein
residues_begin() : dsrpdb::Protein
residues_end() : dsrpdb::Protein
Residues_iterator : dsrpdb::Protein
result_type : dsrpdb::Atom_index, dsrpdb::Atom_coordinates
rit_ : dsrpdb::Protein::Bonds_iterator, dsrpdb::Protein::Const_atoms_iterator, dsrpdb::Protein::Atoms_iterator

- s -

s : dsrpdb::Residue_data::Atom_data
segID_ : dsrpdb::Atom
segment_id() : dsrpdb::Atom
sequence() : dsrpdb::Protein
set_atom() : dsrpdb::Residue, dsrpdb::Protein
set_atom_from_string() : dsrpdb::Residue
set_cartesian_coords() : dsrpdb::Atom
set_chain() : dsrpdb::Protein
set_charge() : dsrpdb::Atom
set_element() : dsrpdb::Atom
set_has_bonds() : dsrpdb::Residue, dsrpdb::Protein
set_header() : dsrpdb::PDB
set_index() : dsrpdb::Residue, dsrpdb::Model, dsrpdb::Atom
set_occupancy() : dsrpdb::Atom
set_segment_id() : dsrpdb::Atom
set_temperature_factor() : dsrpdb::Atom
set_translation() : dsrpdb::Transform
set_type() : dsrpdb::Atom
sidechain_point() : dsrpdb::Residue
size() : dsrpdb::small_map< Key, Data >
small_map() : dsrpdb::small_map< Key, Data >

- t -

t : dsrpdb::Residue_data::Atom_data
temp_factor_ : dsrpdb::Atom
temperature_factor() : dsrpdb::Atom
This : dsrpdb::labeled_index< Type >, dsrpdb::label< Type >
Transform() : dsrpdb::Transform
Type : dsrpdb::Residue, dsrpdb::Atom
type() : dsrpdb::Residue, dsrpdb::Atom
type_ : dsrpdb::Atom
type_string() : dsrpdb::Residue

- v -

- w -

write() : dsrpdb::Transform, dsrpdb::Residue, dsrpdb::Protein, dsrpdb::PDB_index< Type >, dsrpdb::PDB, dsrpdb::Model
write_pdb() : dsrpdb::Protein

- x -

x() : dsrpdb::Point
x_ : dsrpdb::Point

- y -

y() : dsrpdb::Point
y_ : dsrpdb::Point

- z -

z() : dsrpdb::Point
z_ : dsrpdb::Point